List of repository modules/files being visualised in the above diagram:
deeprank2/__init__.py
deeprank2/domain/__init__.py
deeprank2/domain/aminoacidlist.py
deeprank2/domain/edgestorage.py
deeprank2/domain/forcefield/__init__.py
deeprank2/domain/gridstorage.py
deeprank2/domain/losstypes.py
deeprank2/domain/nodestorage.py
deeprank2/domain/targetstorage.py
deeprank2/features/__init__.py
deeprank2/features/components.py
deeprank2/features/conservation.py
deeprank2/features/contact.py
deeprank2/features/exposure.py
deeprank2/features/irc.py
deeprank2/features/secondary_structure.py
deeprank2/features/surfacearea.py
deeprank2/molstruct/__init__.py
deeprank2/molstruct/aminoacid.py
deeprank2/molstruct/atom.py
deeprank2/molstruct/pair.py
deeprank2/molstruct/residue.py
deeprank2/molstruct/structure.py
deeprank2/query.py
deeprank2/tools/__init__.py
deeprank2/tools/target.py
deeprank2/utils/__init__.py
deeprank2/utils/buildgraph.py
deeprank2/utils/graph.py
deeprank2/utils/grid.py
deeprank2/utils/parsing/__init__.py
deeprank2/utils/parsing/patch.py
deeprank2/utils/parsing/pssm.py
deeprank2/utils/parsing/residue.py
deeprank2/utils/parsing/top.py
deeprank2/utils/parsing/vdwparam.py
deeprank2/utils/pssmdata.py